ARSRL DigiEpi Workshop
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  • Agenda
  • Syllabus
  • Resource Speakers
  • Concept Overview
  • Module
    • UNIT 1 - SaTScan and Whole Genome Sequencing Enhanced Outbreak Investigation Protocol
    • UNIT 2 - Digital Epidemiology Tool: EPICOLLECT
    • UNIT 3 - Digital Epidemiology Tool: PATHOGENWATCH
    • UNIT 4 - Digital Epidemiology Tool: DATA-FLO
    • UNIT 5 - Digital Epidemiology Tool: MICROREACT
  • Workshop Materials
    • Microreact Project
    • Microreact Project Links
    • Pre-test
    • Post-test
    • Quick Guide Videos
    • Concept Note Template
    • Mentimeter QR Codes
    • Evaluation Form
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Microreact Project Links

Group Number Study Title DOI Microreact Project Link
1 Revised nomenclature and SNP barcode for Mycobacterium tuberculosis lineage 2 https://doi.org/10.1099/mgen.0.000697 https://microreact.org/project/4kJjFVPWe3TbfwFtqY3ED8
2 Spatiotemporal transmission of SARS-CoV-2 lineages during 2020–2021 in Pernambuco—Brazil https://doi.org/10.1128/spectrum.04218-23 https://microreact.org/project/k9UFJmkrZHSx9RmFbDwZah-sars-cov-2-final-update-pernambuco
3 Virus genomes reveal factors that spread and sustained the Ebola epidemic https://doi.org/10.1038/nature22040 https://microreact.org/project/west-african-ebola-epidemic?tt=rc
4 Global phylogenomic diversity of Brucella abortus: spread of a dominant https://doi.org/10.3389/fmicb.2023.1287046 https://microreact.org/project/t3oxnHhmZrAhtuw6mamutc-b-abortusglobal-phylogenomic-diversity
5 The seventh pandemic of cholera in Europe revisited by microbial genomics https://doi.org/10.3389/fmicb.2023.1287046 https://microreact.org/project/choleraeurope
6 Phylodynamics of HIV in the Mexico City Metropolitan Region https://doi.org/10.1128/jvi.00708-22 https://microreact.org/project/223ln8u9trx5cqxdaeyfsu
7 Spatial analysis of dengue transmission in an endemic city in Brazil reveals high spatial structuring on local dengue transmission dynamics https://doi.org/10.1038/s41598-024-59537-y https://microreact.org/project/8DhMNEmMEbFUsvK9xHS349-foz
8 Malaria Molecular Surveillance in the Peruvian Amazon with a Novel Highly Multiplexed Plasmodium falciparum AmpliSeq Assay https://doi.org/10.1128/spectrum.00960-22 https://microreact.org/project/aV7RHNCBmG3sJ2rwzchE4k-peru-2003-2018-molecular-surveillance-with-p-falciparum-ampliseq-assay

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